Welcome to T3/Barley


This is the SANDBOX site for T3/Barley. The Sandbox can be used to test the addition of new data to T3/Barley. Data added to this site will be periodically cleared and reset to match the main production version of T3/Barley. For more information on adding data to the Sandbox and submitting it to the production site, see the submitting data sections below.


The Triticeae Toolbox (T3) is the web portal for data generated by the Triticeae Coordinated Agricultural Project (T-CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). It also contains data from US Uniform Regional Nurseries, supported by the US Wheat and Barley Scab Initiative. The database was initially developed as The Hordeum Toolbox (THT) to hold barley data generated by the Barley CAP project (2006-2010).

T3 Barley is an extension of The Hordeum Toolbox (THT), which was created by the preceding Barley CAP. T3 Barley incorporates all of the THT data.



Data Usage Policy

The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.




News

Breedbase Workshop Notes & Videos

September 10, 2020

T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.

Video recordings of the workshop are available on the Breedbase YouTube Channel.

T3 Phenotype Data Loaded

July 29, 2020

1149 Phenotype trials and mean data loaded from T3.

Go to the Search > Trials

Maps and JBrowse added

July 22, 2020

Physical maps for Morex 2016 and Barley 50K added

Go to the Maps

Accessions Added

June 26, 2020

All Accessions (about 60,000 in total) from the T3/Classic barley database have been transferred over to T3/Breedbase barley database.

Go to the Search > Accessions and Plots



Explore T3/Barley

 New User

To view most of the data on T3/Barley, you'll first need to create a free account.


 Login

If you already have an account, login to get full access.

Use the Search Wizard to explore the database or search individual data types:



Explore Experiments in the Search Wizard:

You must first log in to view the lists of experiments...




Submit Phenotype Data

To submit phenotype data to T3/Barley follow these three general steps:

Step 1: Create Upload Templates

Data submitted to T3/Barley should be in the format of the upload template for the data type you are submitting. View the detailed upload instructions for specific information on each data type.

Step 2: Add Data to Sandbox

Once you have your upload templates, you can test-load them on this Sandbox site to check for any errors.

Step 3: Submit Trial Data

If your trial data has been successfully added to the Sandbox you can submit your trials directly to the production site by clicking the Submit Trial button on the trial detail page.

If your data has not been added to the Sandbox or if you would prefer to submit your files directly to the production site, you can submit your individual upload templates or data files to us using the Phenotype Submission Form.


  Detailed Upload Instructions


Submit Genotype Data

Please Contact Us if you have genotype data you would like to submit to T3/Barley.




User Guides

New to T3/Barley?

View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.





Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2015. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.

T3/Barley is open source software and available under the MIT License and may be downloaded from GitHub.